S$56 Cheap Flights from Manila to Kota Kinabalu

View S$56 flight on Fri, 8 Aug, 2025Opens in a new window

Popular airlines from Ninoy Aquino Intl. Airport (MNL) to Kota Kinabalu Intl. Airport (BKI)

  • Plan, book, fly with confidence

  • trending down icon

    Be in the know

    Get alerts if flight prices drop or rise*
  • bex rewards loyalty icon

    Book smarter

    Save up to 40% on select hotels after you book a flight*
  • payments icon

    Earn twice

    Earn your airline miles on top of our rewards
    Sign in

Cheap Flights from Manila to Kota Kinabalu (MNL-BKI)

Prices were available within the past 7 days and start at S$56 for one-way flights and S$101 for round trip, for the period specified. Prices and availability are subject to change. Additional terms apply.

Philippines AirAsia
Thu, 4 Sep - Sun, 7 Sep
MNL
Manila
BKI
Kota Kinabalu
S$101 Return, found 1 day ago
S$101
Return
found 1 day ago
Select Philippines AirAsia flight, departing Thu, 4 Sep from Manila to Kota Kinabalu, returning Sun, 7 Sep, priced at S$101 found 1 day ago
Philippines AirAsia
Thu, 11 Sep - Wed, 17 Sep
MNL
Manila
BKI
Kota Kinabalu
S$101 Return, found 6 days ago
S$101
Return
found 6 days ago
Select Philippines AirAsia flight, departing Thu, 11 Sep from Manila to Kota Kinabalu, returning Wed, 17 Sep, priced at S$101 found 6 days ago
Philippines AirAsia
Mon, 10 Nov - Fri, 14 Nov
MNL
Manila
BKI
Kota Kinabalu
S$110 Return, found 2 days ago
S$110
Return
found 2 days ago
Select Philippines AirAsia flight, departing Mon, 10 Nov from Manila to Kota Kinabalu, returning Fri, 14 Nov, priced at S$110 found 2 days ago
Philippines AirAsia
Wed, 15 Oct - Wed, 29 Oct
MNL
Manila
BKI
Kota Kinabalu
S$127 Return, found 2 days ago
S$127
Return
found 2 days ago
Select Philippines AirAsia flight, departing Wed, 15 Oct from Manila to Kota Kinabalu, returning Wed, 29 Oct, priced at S$127 found 2 days ago
Philippines AirAsia
Wed, 17 Sep - Sun, 21 Sep
MNL
Manila
BKI
Kota Kinabalu
S$144 Return, found 4 days ago
S$144
Return
found 4 days ago
Select Philippines AirAsia flight, departing Wed, 17 Sep from Manila to Kota Kinabalu, returning Sun, 21 Sep, priced at S$144 found 4 days ago
Philippines AirAsia
Tue, 9 Sep - Fri, 12 Sep
MNL
Manila
BKI
Kota Kinabalu
S$146 Return, found 5 hours ago
S$146
Return
found 5 hours ago
Select Philippines AirAsia flight, departing Tue, 9 Sep from Manila to Kota Kinabalu, returning Fri, 12 Sep, priced at S$146 found 5 hours ago
Scoot
Mon, 19 Jan - Fri, 23 Jan
MNL
Manila
BKI
Kota Kinabalu
S$255 Return, found 6 days ago
S$255
Return
found 6 days ago
Select Scoot flight, departing Mon, 19 Jan from Manila to Kota Kinabalu, returning Fri, 23 Jan, priced at S$255 found 6 days ago
Royal Brunei Airlines
Fri, 31 Oct - Sun, 2 Nov
MNL
Manila
BKI
Kota Kinabalu
S$370 Return, found 2 days ago
S$370
Return
found 2 days ago
Select Royal Brunei Airlines flight, departing Fri, 31 Oct from Manila to Kota Kinabalu, returning Sun, 2 Nov, priced at S$370 found 2 days ago
China Southern Airlines
Mon, 10 Nov - Fri, 14 Nov
MNL
Manila
BKI
Kota Kinabalu
S$423 Return, found 2 days ago
S$423
Return
found 2 days ago
Select China Southern Airlines flight, departing Mon, 10 Nov from Manila to Kota Kinabalu, returning Fri, 14 Nov, priced at S$423 found 2 days ago
Singapore Airlines
Tue, 14 Oct - Fri, 17 Oct
MNL
Manila
BKI
Kota Kinabalu
S$450 Return, found 2 days ago
S$450
Return
found 2 days ago
Select Singapore Airlines flight, departing Tue, 14 Oct from Manila to Kota Kinabalu, returning Fri, 17 Oct, priced at S$450 found 2 days ago

Find the cheapest month to fly from Manila (MNL) to Kota Kinabalu (BKI)

September is typically the cheapest month to fly

From S$89 - S$444 per traveller.

Graph displaying average flight prices per month

Manila to Kota Kinabalu route information
Origin airport
Ninoy Aquino Intl.
Destination airport
Kota Kinabalu Intl.
Airlines serving
China Southern Airlines, Jeju Air with Bag, Malaysia Airlines, Philippine Airlines, Royal Brunei Airlines, Scoot, Singapore Airlines
Return price
S$100
Distance
1090 km
Average flight time
2 hours 10 mins

Perfect flights from Manila to Kota Kinabalu

Your Journey from Manila to Kota Kinabalu

Start your unforgettable journey with Expedia. Our broad selection of flights from Manila to Kota Kinabalu caters to every travel need. Whether you're yearning for a romantic escape, a solo adventure, or a cultural immersion, we've got you covered.
 

Choosing Your Ideal Flight

With Expedia, you have access to a wide range of airlines, including Philippines AirAsia, Scoot, Royal Brunei Airlines, Jeju Air with Bag, China Southern Airlines, Singapore Airlines. Our selection of flights from Ninoy Aquino Intl. to Kota Kinabalu Intl. caters to every traveler's requirements, ensuring your journey aligns with your schedule. With options from 20 airlines, you're bound to find the perfect flight.
 

Maximizing Value with Manila to Kota Kinabalu Flights

Experience the joy of finding cheap flights from Ninoy Aquino Intl. to Kota Kinabalu Intl. that fit your budget. Keep an eye out for our special deals and discounts, and check our flexible one-way fares from S$56 and roundtrip prices from S$101*.
 

Pre-Flight Essentials

Ensure a smooth journey from Manila to Kota Kinabalu with Expedia. From information about check-in times and in-flight amenities to guidance on baggage policies, we provide all the essentials to prepare you for your flight.
 

Experience the Vibrant Kota Kinabalu

Picture yourself stepping off the plane in Kota Kinabalu and immersing yourself in the unique atmosphere of . From local markets to cultural festivals, each city offers its distinct charm. Make the most of your trip by exploring local attractions and indulging in the local cuisine. With Expedia, explore all this and more, tailored to your budget.
 

Added Convenience on Your Manila to Kota Kinabalu Flight

Traveling with Expedia is more than just a flight. We offer details about in-flight amenities, baggage policies, and more to ensure a smooth and hassle-free journey. Choose from our variety of airlines and embark on a memorable journey from Manila to Kota Kinabalu.
 

Beyond the Flight – Exploring Kota Kinabalu

With Expedia, your adventure extends beyond the flight. Explore Kota Kinabalu at your own pace by renting a car or booking a hotel. Discover hidden gems off the beaten path and create unforgettable memories.
 

Book Your Flight from Manila to Kota Kinabalu with Confidence

Planning your next great adventure is a breeze with Expedia. Our user-friendly platform, unbeatable prices, and round-the-clock customer support make your travel experience seamless and stress-free. Embark on your journey from Manila to Kota Kinabalu with confidence. Book your travel arrangements with Expedia today.
 
*Note: Prices may vary based on availability and are subject to change.

Frequently asked questions

How much is a flight from Manila Intl. Airport to Kota Kinabalu Intl. Airport (BKI)?
Pack your bags, because round-trip journeys between MNL and Kota Kinabalu International Airport start from S$101. That's based on fares listed within the last 7 days on Expedia for flights departing within the next year. Prices can move quickly, so book now to secure the best deal. Prices and availability are subject to change. Additional terms apply.
Do I need to pay a cancellation fee if I cancel my flight from MNL to Kota Kinabalu Intl. Airport (BKI)?
The majority of flights can be cancelled online, but each air carrier has its own terms and conditions. If you do need to cancel your flight, check out our Customer Service Portal and follow the instructions.
How do I find cheap flights from Manila Intl. Airport to Kota Kinabalu International Airport that have flexible change policies?
Many airlines offer the option to reschedule your flight without a change fee. All you pay is the difference between the original flight and the new flight. When you're searching for Ninoy Aquino Intl. Airport (MNL) to Kota Kinabalu Intl. Airport (BKI) flights, you'll see a "no change fees" filter for you to select.
How far is the flight from Ninoy Aquino Intl. Airport (MNL) to Kota Kinabalu International Airport?
Forget about a movie marathon on this flight — it's just 1,100 kilometres from Parañaque to Kota Kinabalu. Find your way to your seat, order a snack and you'll be there in next to no time.
Which airlines fly direct from Manila Intl. Airport to Kota Kinabalu Intl. Airport (BKI)?
With 30 monthly flights operating from Ninoy Aquino Intl. Airport (MNL) to Kota Kinabalu International Airport, Philippines AirAsia (Z2) is a top choice. Like more options? Check out the seats available with Cebu Pacific Air (5J). This carrier offers 8 fights monthly between these airports.
Are Manila Intl. Airport to Kota Kinabalu Intl. Airport (BKI) flight tickets cheaper when they're purchased at the last minute?
Last-minute planners can occasionally find a bargain, with some super cheap fares from MNL to Kota Kinabalu Intl. Airport (BKI) cropping up a few weeks before the date of departure. If you'd rather book ahead, Expedia compares and updates the best flight deals continuously — as early as 12 months in advance in some cases. It depends on the carrier though, as not all airlines release prices that far in advance.

Explore a world of travel with Expedia

*Available to Expedia members.