S$67 Cheap Flights from Manila to Kota Kinabalu

View S$67 flight on Wed, 8 Apr, 2026Opens in a new window

Popular airlines from Ninoy Aquino Intl. Airport (MNL) to Kota Kinabalu Intl. Airport (BKI)

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Cheap Flights from Manila to Kota Kinabalu (MNL-BKI)

Prices were available within the past 7 days and start at S$67 for one-way flights and S$135 for round trip, for the period specified. Prices and availability are subject to change. Additional terms apply.

Philippines AirAsia
Wed, 10 Jun - Tue, 16 Jun
MNL
Manila
BKI
Kota Kinabalu
S$135 Return, found 1 hour ago
S$135
Return
found 1 hour ago
Select Philippines AirAsia flight, departing Wed, 10 Jun from Manila to Kota Kinabalu, returning Tue, 16 Jun, priced at S$135 found 1 hour ago
Philippines AirAsia
Wed, 18 Nov - Wed, 25 Nov
MNL
Manila
BKI
Kota Kinabalu
S$135 Return, found 4 days ago
S$135
Return
found 4 days ago
Select Philippines AirAsia flight, departing Wed, 18 Nov from Manila to Kota Kinabalu, returning Wed, 25 Nov, priced at S$135 found 4 days ago
Philippines AirAsia
Wed, 24 Jun - Sat, 27 Jun
MNL
Manila
BKI
Kota Kinabalu
S$136 Return, found 5 days ago
S$136
Return
found 5 days ago
Select Philippines AirAsia flight, departing Wed, 24 Jun from Manila to Kota Kinabalu, returning Sat, 27 Jun, priced at S$136 found 5 days ago
Philippines AirAsia
Mon, 23 Mar - Mon, 30 Mar
MNL
Manila
BKI
Kota Kinabalu
S$140 Return, found 6 days ago
S$140
Return
found 6 days ago
Select Philippines AirAsia flight, departing Mon, 23 Mar from Manila to Kota Kinabalu, returning Mon, 30 Mar, priced at S$140 found 6 days ago
Philippines AirAsia
Wed, 11 Mar - Fri, 13 Mar
MNL
Manila
BKI
Kota Kinabalu
S$142 Return, found 3 days ago
S$142
Return
found 3 days ago
Select Philippines AirAsia flight, departing Wed, 11 Mar from Manila to Kota Kinabalu, returning Fri, 13 Mar, priced at S$142 found 3 days ago
Philippines AirAsia
Fri, 6 Mar - Sun, 8 Mar
MNL
Manila
BKI
Kota Kinabalu
S$145 Return, found 6 days ago
S$145
Return
found 6 days ago
Select Philippines AirAsia flight, departing Fri, 6 Mar from Manila to Kota Kinabalu, returning Sun, 8 Mar, priced at S$145 found 6 days ago
Scoot
Mon, 4 May - Wed, 6 May
MNL
Manila
BKI
Kota Kinabalu
S$205 Return, found 1 hour ago
S$205
Return
found 1 hour ago
Select Scoot flight, departing Mon, 4 May from Manila to Kota Kinabalu, returning Wed, 6 May, priced at S$205 found 1 hour ago
Singapore Airlines
Sun, 3 May - Wed, 6 May
MNL
Manila
BKI
Kota Kinabalu
S$350 Return, found 1 hour ago
S$350
Return
found 1 hour ago
Select Singapore Airlines flight, departing Sun, 3 May from Manila to Kota Kinabalu, returning Wed, 6 May, priced at S$350 found 1 hour ago
Royal Brunei Airlines
Wed, 10 Jun - Tue, 16 Jun
MNL
Manila
BKI
Kota Kinabalu
S$376 Return, found 1 hour ago
S$376
Return
found 1 hour ago
Select Royal Brunei Airlines flight, departing Wed, 10 Jun from Manila to Kota Kinabalu, returning Tue, 16 Jun, priced at S$376 found 1 hour ago
China Southern Airlines
Fri, 6 Mar - Sun, 8 Mar
MNL
Manila
BKI
Kota Kinabalu
S$385 Return, found 6 days ago
S$385
Return
found 6 days ago
Select China Southern Airlines flight, departing Fri, 6 Mar from Manila to Kota Kinabalu, returning Sun, 8 Mar, priced at S$385 found 6 days ago

Find the cheapest month to fly from Manila (MNL) to Kota Kinabalu (BKI)

September is typically the cheapest month to fly

From S$90 - S$382 per traveller.
Manila to Kota Kinabalu route information
Origin airport
Ninoy Aquino Intl.
Destination airport
Kota Kinabalu Intl.
Airlines serving
Cathay Pacific, China Southern Airlines, Malaysia Airlines, Philippine Airlines, Scoot, Singapore Airlines
Return price
S$134
Distance
1090 km
Average flight time
2 hours 15 mins

Perfect flights from Manila to Kota Kinabalu

Your Journey from Manila to Kota Kinabalu

Start your unforgettable journey with Expedia. Our broad selection of flights from Manila to Kota Kinabalu caters to every travel need. Whether you're yearning for a romantic escape, a solo adventure, or a cultural immersion, we've got you covered.
 

Choosing Your Ideal Flight

With Expedia, you have access to a wide range of airlines, including Philippines AirAsia, Scoot, Royal Brunei Airlines, Malaysia Airlines, Cathay Pacific, Singapore Airlines, China Southern Airlines. Our selection of flights from Ninoy Aquino Intl. to Kota Kinabalu Intl. caters to every traveler's requirements, ensuring your journey aligns with your schedule. With options from 20 airlines, you're bound to find the perfect flight.
 

Maximizing Value with Manila to Kota Kinabalu Flights

Experience the joy of finding cheap flights from Ninoy Aquino Intl. to Kota Kinabalu Intl. that fit your budget. Keep an eye out for our special deals and discounts, and check our flexible one-way fares from S$67 and roundtrip prices from S$135*.
 

Pre-Flight Essentials

Ensure a smooth journey from Manila to Kota Kinabalu with Expedia. From information about check-in times and in-flight amenities to guidance on baggage policies, we provide all the essentials to prepare you for your flight.
 

Experience the Vibrant Kota Kinabalu

Picture yourself stepping off the plane in Kota Kinabalu and immersing yourself in the unique atmosphere of . From local markets to cultural festivals, each city offers its distinct charm. Make the most of your trip by exploring local attractions and indulging in the local cuisine. With Expedia, explore all this and more, tailored to your budget.
 

Added Convenience on Your Manila to Kota Kinabalu Flight

Traveling with Expedia is more than just a flight. We offer details about in-flight amenities, baggage policies, and more to ensure a smooth and hassle-free journey. Choose from our variety of airlines and embark on a memorable journey from Manila to Kota Kinabalu.
 

Beyond the Flight – Exploring Kota Kinabalu

With Expedia, your adventure extends beyond the flight. Explore Kota Kinabalu at your own pace by renting a car or booking a hotel. Discover hidden gems off the beaten path and create unforgettable memories.
 

Book Your Flight from Manila to Kota Kinabalu with Confidence

Planning your next great adventure is a breeze with Expedia. Our user-friendly platform, unbeatable prices, and round-the-clock customer support make your travel experience seamless and stress-free. Embark on your journey from Manila to Kota Kinabalu with confidence. Book your travel arrangements with Expedia today.
 
*Note: Prices may vary based on availability and are subject to change.

Frequently asked questions

How much is a flight from Manila Intl. Airport to Kota Kinabalu Intl. Airport (BKI)?
Pack your bags, because round-trip journeys between MNL and Kota Kinabalu International Airport start from S$135. That's based on fares listed within the last 7 days on Expedia for flights departing within the next year. Prices can move quickly, so book now to secure the best deal. Prices and availability are subject to change. Additional terms apply.
Do I need to pay a cancellation fee if I cancel my flight from MNL to Kota Kinabalu Intl. Airport (BKI)?
The majority of flights can be cancelled online, but each air carrier has its own terms and conditions. If you do need to cancel your flight, check out our Customer Service Portal and follow the instructions.
How do I find cheap flights from Manila Intl. Airport to Kota Kinabalu International Airport that have flexible change policies?
Many airlines offer the option to reschedule your flight without a change fee. All you pay is the difference between the original flight and the new flight. When you're searching for Ninoy Aquino Intl. Airport (MNL) to Kota Kinabalu Intl. Airport (BKI) flights, you'll see a "no change fees" filter for you to select.
How far is the flight from Ninoy Aquino Intl. Airport (MNL) to Kota Kinabalu International Airport?
Forget about a movie marathon on this flight — it's just 1,100 kilometres from Parañaque to Kota Kinabalu. Find your way to your seat, order a snack and you'll be there in next to no time.
Which airlines fly direct from Manila Intl. Airport to Kota Kinabalu Intl. Airport (BKI)?
With 30 monthly flights operating from Ninoy Aquino Intl. Airport (MNL) to Kota Kinabalu International Airport, Philippines AirAsia (Z2) is a top choice. Like more options? Check out the seats available with Cebu Pacific Air (5J). This carrier offers 8 fights monthly between these airports.
Are Manila Intl. Airport to Kota Kinabalu Intl. Airport (BKI) flight tickets cheaper when they're purchased at the last minute?
Last-minute planners can occasionally find a bargain, with some super cheap fares from MNL to Kota Kinabalu Intl. Airport (BKI) cropping up a few weeks before the date of departure. If you'd rather book ahead, Expedia compares and updates the best flight deals continuously — as early as 12 months in advance in some cases. It depends on the carrier though, as not all airlines release prices that far in advance.

Explore a world of travel with Expedia

*Available to Expedia members.