What is Mission Bay like?

You'll be sure to have fun exploring San Diego's Mission Bay neighbourhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighbourhood.

What's a favourite hotel to stay in Mission Bay?

Based on Expedia customer reviews, Paradise Point Resort & Spa is the highest ranked property in Mission Bay. This resort offers a marina and 5 outdoor pools. Other favourite options in the area include The Dana on Mission Bay and San Diego Mission Bay Resort .

How many hotels should I expect to find in the Mission Bay area?

If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodation options to choose from.

If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?

Yes, you'll find most room reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might be able to still cancel and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then you can use the "fully refundable" filter to view top deals in Mission Bay.

What is there to do around this San Diego neighbourhood?

Enjoy a stroll along the shore at Mission and Pacific Beaches, Ski Beach and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or Mission Bay Golf Course while you're in the neighbourhood. Mission Beach, North Cove Beach and Bahia Point Beach are just a few of the places to visit in and around Mission Bay. When you're sightseeing in San Diego, Bay City Brewing Co. and Sail Bay are also worth a stop.

Hotels in Mission Bay

Where to?

Dates

April 2026

May 2026

Change your mind
Book hotels with free cancellation
Treat yourself
Sign in to save 10% or more on thousands of hotels
Sign in
Be picky
Search almost a million properties worldwide

Our top choices for Mission Bay hotels

Outdoor pool, open 7:00 AM to 10:00 PM, pool cabanas (surcharge)

San Diego Mission Bay Resort

Mission Bay

Joel

includes taxes & fees

12 Apr - 13 Apr

5 outdoor pools, a heated pool, pool umbrellas, pool loungers

Paradise Point Resort & Spa

Mission Bay

Vera

includes taxes & fees

26 Apr - 27 Apr

2 outdoor pools, a heated pool, pool loungers

The Dana on Mission Bay

Mission Bay

Michael

includes taxes & fees

5 Apr - 6 Apr

3 outdoor pools, pool cabanas (surcharge), pool umbrellas

Hyatt Regency Mission Bay Spa and Marina

Mission Bay

Hanna

includes taxes & fees

26 Apr - 27 Apr

Valli Hi Motel

28.8 km from Mission Bay

Kasandra

includes taxes & fees

5 Apr - 6 Apr

Hampton Inn & Suites San Diego Airport Liberty Station

5.3 km from Mission Bay

Christopher

includes taxes & fees

3 Apr - 4 Apr

Ayres Hotel San Diego South - Chula Vista

29.6 km from Mission Bay

Kenneth

includes taxes & fees

19 Apr - 20 Apr

Desk, blackout curtains, iron/ironing board, free WiFi

Hotel Palmeras Chula Vista

19.4 km from Mission Bay

Dulce

includes taxes & fees

2 Apr - 3 Apr

Premium bedding, in-room safe, desk, laptop workspace

Best Western Plus Marina Gateway Hotel

16.7 km from Mission Bay

Deante

includes taxes & fees

12 Apr - 13 Apr

Best Western Americana Inn

28.6 km from Mission Bay

Maria

includes taxes & fees

1 Apr - 2 Apr

Sheraton San Diego Resort

6 km from Mission Bay

Emily

includes taxes & fees

1 Apr - 2 Apr

Embassy Suites by Hilton San Diego La Jolla

11 km from Mission Bay

Christopher

includes taxes & fees

5 Apr - 6 Apr

Wyndham Garden San Diego Near SeaWorld

2.6 km from Mission Bay

Wayne

includes taxes & fees

5 Apr - 6 Apr

California Suites Hotel

7.8 km from Mission Bay

Melissa

includes taxes & fees

12 Apr - 13 Apr

HYATT house San Diego/Sorrento Mesa

14 km from Mission Bay

Peggy Sue

includes taxes & fees

2 Apr - 3 Apr

The Rambler Hotel

19.2 km from Mission Bay

Sarkis

includes taxes & fees

20 Apr - 21 Apr

Heritage Inn San Diego

2.2 km from Mission Bay

Pedro

includes taxes & fees

30 Mar - 31 Mar

Old Town Inn

3.5 km from Mission Bay

Samantha

includes taxes & fees

6 Apr - 7 Apr

Best Western Plus La Mesa San Diego

21.6 km from Mission Bay

Scott

includes taxes & fees

2 Apr - 3 Apr

Pleasant Inn

8 km from Mission Bay

Ernestina

includes taxes & fees

7 Apr - 8 Apr

View all properties

Where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

See properties

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

See properties

Mission Beach

If you're spending some time in Mission Beach, Mission Bay and Mission Beach are top sights worth seeing.

See properties

Gaslamp Quarter

The historic heart of San Diego has a fascinating history, and today is a thriving hub for food, retail and entertainment.

See properties

Ocean Beach

With a secluded sunbathing beach, swimming-only beach, special surf beach, volleyball beach and dog beach, San Diego’s “OB” sure takes beaches seriously.

See properties

Top Mission Bay Hotel Reviews

San Diego Mission Bay Resort

6/10 Okay

"There appears to be an issue with the plumbing—every time a toilet was flushed, it made a very loud noise that sounded like the whole toilet was falling through the floor. I was also overcharged for parking after checkout, despite advising the front desk that only one night should be billed. I’ve reached out by email and through Expedia and have not received any response."