What is Mission Bay like?

You'll be sure to have fun exploring San Diego's Mission Bay neighbourhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighbourhood.

What's a favourite hotel to stay in Mission Bay?

Based on our traveller data, Paradise Point Resort & Spa is one of the top choices for your stay in Mission Bay. This resort is a short 1-minute walk from Mission Bay, and it offers a marina and 5 outdoor pools. Other good options for your stay in the neighbourhood include The Dana on Mission Bay and San Diego Mission Bay Resort .

How many hotels should I expect to find in the Mission Bay area?

If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 37 Mission Bay hotels and other accommodation options to choose from.

If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?

Yes, you'll find most room reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might be able to still cancel and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then you can use the "fully refundable" filter to view top deals in Mission Bay.

What is there to do around this San Diego neighbourhood?

Enjoy a stroll along the shore at Ski Beach, Mission and Pacific Beaches and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or North Cove Beach while you're in the neighbourhood. Don't miss favourite places to visit in the surrounding area, such as Mission Beach, Marine Corps Recruit Depot and Hotel Circle. When you're sightseeing in San Diego, The Dana On Mission Bay, BW Premier Collection and Marina Village Conference Center are also worth a stop.

Top 10 Mission Bay Hotels of 2026

An aerial view of a coastal city with a marina, a large body of water, and a peninsula with buildings.

Change your mind
Book hotels with free cancellation
Treat yourself
Sign in to save 10% or more on thousands of hotels
Sign in
Be picky
Search almost a million properties worldwide

Check prices for these dates

Tonight

Tomorrow

This weekend

Next weekend

Our top choices for Mission Bay hotels

A pool area with a hot tub, lounge chairs, and umbrellas.

1. The Dana on Mission Bay

Mission Bay

Satish

includes taxes & fees

1 Nov - 2 Nov

A poolside view with a lounge chair, a towel, a tray with a drink and a coconut, and a pool with palm trees in the background.

2. San Diego Mission Bay Resort

Mission Bay

brittany

includes taxes & fees

28 Oct - 29 Oct

An aerial view of a resort with a central swimming pool, palm trees, and a view of the ocean and beach.

3. Paradise Point Resort & Spa

Mission Bay

Jesse

includes taxes & fees

1 Nov - 2 Nov

A resort pool with a lazy river, palm trees, and a view of the ocean.

4. Hyatt Regency Mission Bay Spa and Marina

Mission Bay

Farzam

includes taxes & fees

1 Nov - 2 Nov

A hotel with a central courtyard, palm trees, and a fountain.

5. Hilton Garden Inn San Diego Old Town/SeaWorld Area

Old Town San Diego, 3.1 km from Mission Bay

Nayibe

includes taxes & fees

25 Oct - 26 Oct

A modern building with multiple windows, outdoor seating, and a chessboard.

6. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

2.8 km from Mission Bay

Xuan

includes taxes & fees

1 Nov - 2 Nov

7. Comfort Inn San Diego - SeaWorld Area

2.8 km from Mission Bay

Yesenia

includes taxes & fees

26 Oct - 27 Oct

A modern dining area with wooden tables and chairs, a central bar area, and a view of the city through large windows.

8. La Quinta Inn & Suites by Wyndham San Diego Mission Bay

North Pacific Beach, 3.5 km from Mission Bay

Lauren

includes taxes & fees

1 Nov - 2 Nov

An outdoor patio area with tables and chairs, string lights, and a building with balconies.

9. Fairfield Inn & Suites San Diego Old Town

Old Town San Diego, 4.1 km from Mission Bay

Timothy

includes taxes & fees

25 Oct - 26 Oct

A modern hotel room with a large bed, bedside tables, a desk, and a wardrobe.

10. Holiday Inn Express San Diego Airport - Old Town by IHG

4.8 km from Mission Bay

Patricia

includes taxes & fees

27 Oct - 28 Oct

A modern hotel lobby with a central seating area, a bar, and a large window providing natural light.

11. Wyndham Garden San Diego Near SeaWorld

2.6 km from Mission Bay

Nayla

includes taxes & fees

12 Oct - 13 Oct

A living room with a large window, a flat-screen TV, and a patterned rug.

12. GreenTree Inn San Diego Mission Bay

Pacific Beach, 3 km from Mission Bay

Denise

includes taxes & fees

7 Oct - 8 Oct

A hotel breakfast area with a long counter displaying various food items, including fruits, pastries, and a coffee station.

13. Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

3.6 km from Mission Bay

Steve

includes taxes & fees

18 Oct - 19 Oct

A building with a "Bienvenidos" sign, palm trees, and a well-maintained garden.

14. Old Town Inn

3.5 km from Mission Bay

Cindy

includes taxes & fees

7 Oct - 8 Oct

An outdoor seating area with a fire feature, surrounded by palm trees and modern buildings.

15. Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area

4.2 km from Mission Bay

Edith

includes taxes & fees

1 Nov - 2 Nov

A hotel lobby with a waterfall feature, outdoor seating area, and multiple floors with balconies.

16. Crowne Plaza San Diego - Mission Valley by IHG

4 km from Mission Bay

Chris

includes taxes & fees

12 Oct - 13 Oct

A modern dining area with multiple tables and chairs, large windows, and artwork on the walls.

17. Comfort Inn San Diego Old Town

Old Town San Diego, 4 km from Mission Bay

James

includes taxes & fees

26 Oct - 27 Oct

A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.

18. Hampton Inn & Suites San Diego Airport Liberty Station

5.3 km from Mission Bay

Ana Lopez

includes taxes & fees

25 Oct - 26 Oct

A multi-story hotel with a lobby, outdoor seating, and a well-lit entrance.

19. The Alcala Hotel Mission Valley/Seaworld

3.6 km from Mission Bay

Kori

includes taxes & fees

6 Oct - 7 Oct

A spacious kitchen with a central island, wooden ceiling, and modern lighting fixtures.

20. Holiday Inn Express San Diego - SeaWorld Area by IHG

2.3 km from Mission Bay

Patricia

includes taxes & fees

12 Oct - 13 Oct

View all properties

Where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

A large stadium with the sign "Cobo Park" and palm trees around it.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

See properties

A pier extending into the ocean with buildings at the end, under a partly cloudy sky.

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

See properties

A coastal cityscape with a long sandy beach, a pier, and dense urban buildings.

Mission Beach

If you're spending some time in Mission Beach, Mission Bay and Mission Beach are top sights worth seeing.

See properties

Gaslamp Quarter

The historic heart of San Diego has a fascinating history, and today is a thriving hub for food, retail and entertainment.

See properties

A beach with palm trees, a hotel, and people enjoying the sand and water.

Ocean Beach

With a secluded sunbathing beach, swimming-only beach, special surf beach, volleyball beach and dog beach, San Diego’s “OB” sure takes beaches seriously.

See properties

Top Mission Bay Hotel Reviews

California Suites Hotel

8/10 Good

"Had a very good experience with the stay and the staff… only thing was requested maid service to the room around 7 am and got home around 3 and still wasn’t completed I had to call to request to the lobby. Other than that it was great"

The Alcala Hotel Mission Valley/Seaworld

10/10 Excellent

"I had a great stay overall. The room was clean, comfortable, and well maintained, and the property was in a convenient location with plenty of things nearby. The staff was friendly and helpful whenever I needed anything, and check-in and check-out were easy. I also appreciated how comfortable and welcoming the property felt throughout my stay. I would definitely consider staying here again and would recommend it to anyone visiting the area."

Hyatt Regency Mission Bay Spa and Marina

10/10 Excellent

"Overall, our stay was very good! The staff was friendly, and there were plenty of things to do, especially for families with kids. They have free marshmallow bonfires, complimentary shuttles to the sea world, ping-pong, movie nights, and other fun kids’ activities. The breakfast was okay, but overall, we really enjoyed our stay. This is definitely a very kid-friendly environment, and I would recommend it to families looking for a fun and welcoming place to stay."

Hotels in Mission Bay

Change your mind

Treat yourself

Be picky

Check prices for these dates

Filter by

Star rating

Guest rating

Our top choices for Mission Bay hotels

1. The Dana on Mission Bay

2. San Diego Mission Bay Resort

3. Paradise Point Resort & Spa

4. Hyatt Regency Mission Bay Spa and Marina

5. Hilton Garden Inn San Diego Old Town/SeaWorld Area

6. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

7. Comfort Inn San Diego - SeaWorld Area

8. La Quinta Inn & Suites by Wyndham San Diego Mission Bay

9. Fairfield Inn & Suites San Diego Old Town

10. Holiday Inn Express San Diego Airport - Old Town by IHG

11. Wyndham Garden San Diego Near SeaWorld

12. GreenTree Inn San Diego Mission Bay

13. Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

14. Old Town Inn

15. Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area

16. Crowne Plaza San Diego - Mission Valley by IHG

17. Comfort Inn San Diego Old Town

18. Hampton Inn & Suites San Diego Airport Liberty Station

19. The Alcala Hotel Mission Valley/Seaworld

20. Holiday Inn Express San Diego - SeaWorld Area by IHG

Where to stay in Mission Bay

Downtown San Diego

Pacific Beach

Mission Beach

Gaslamp Quarter

Ocean Beach

Top Mission Bay Hotel Reviews

California Suites Hotel

Frequently asked questions