Hotels in Mission Bay

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Mission Bay hotels

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1,455 reviews)
"Perfect place for a family trip "
United States
Krystal
The price is S$371
includes taxes & fees
25 May - 26 May
San Diego Mission Bay Resort

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay
8.8 out of 10, Excellent, (2,593 reviews)
"Great resort for relaxing and enjoying the beachfront access."
United States
narine
The price is S$384
includes taxes & fees
25 May - 26 May
Paradise Point Resort & Spa

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1,632 reviews)
"Great hotel with great staff and amenities. Great location for a San Diego get away."
United States
Donald
The price is S$328
includes taxes & fees
25 May - 26 May
Hyatt Regency Mission Bay Spa and Marina

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay
9.0 out of 10, Wonderful, (4,353 reviews)
"It is a beautiful place to stay."
United States
Dorothy
The price is S$326
includes taxes & fees
17 May - 18 May
The Dana on Mission Bay

Sheraton San Diego Resort

Sheraton San Diego Resort
4.0 star property
6 km from Mission Bay
8.4 out of 10, Very good, (3,537 reviews)
"Great place to stay "
United States
Tonya
The price is S$246
includes taxes & fees
25 May - 26 May
Sheraton San Diego Resort

Lafayette Hotel & Club

Lafayette Hotel & Club
4.0 star property
8.1 km from Mission Bay
9.4 out of 10, Exceptional, (1,643 reviews)
"Very accommodating and what a lovely place!!"
United States
Myra
The price is S$363
includes taxes & fees
13 May - 14 May
Lafayette Hotel & Club

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2.3 km from Mission Bay
8.6 out of 10, Excellent, (2,068 reviews)
"Nice place to stay with the kids."
United States
Paul
The price is S$326
includes taxes & fees
17 May - 18 May
Bahia Resort Hotel

Best Western Americana Inn

Best Western Americana Inn
2.5 star property
28.6 km from Mission Bay
9.0 out of 10, Wonderful, (1,274 reviews)
"Clean room, nice staff, a simple breakfast, and free parking on site."
United States
Nicole
The price is S$147
includes taxes & fees
28 May - 29 May
Best Western Americana Inn

Hilton Garden Inn San Diego Old Town/SeaWorld Area

Hilton Garden Inn San Diego Old Town/SeaWorld Area
3.0 star property
Old Town San Diego, 3.1 km from Mission Bay
8.8 out of 10, Excellent, (1,439 reviews)
"Very nice stay, would love to stay there again"
United States
Erika
The price is S$175
includes taxes & fees
17 May - 18 May
Hilton Garden Inn San Diego Old Town/SeaWorld Area

Pleasant Inn

Pleasant Inn
2.5 star property
8 km from Mission Bay
8.6 out of 10, Excellent, (1,394 reviews)
"Clean room nice staff"
United States
Elizabeth
The price is S$136
includes taxes & fees
12 May - 13 May
Pleasant Inn

Kings Inn San Diego

Kings Inn San Diego
2.5 star property
4.9 km from Mission Bay
8.8 out of 10, Excellent, (3,712 reviews)
"Decent hotel for the price :)"
United States
Angel
The price is S$141
includes taxes & fees
12 May - 13 May
Kings Inn San Diego

Holiday Inn Express San Diego Airport - Old Town by IHG

Holiday Inn Express San Diego Airport - Old Town by IHG
2.5 star property
4.8 km from Mission Bay
9.2 out of 10, Wonderful, (1,069 reviews)
"Staff was so great nice rooms really great stay"
United States
Amelia
The price is S$230
includes taxes & fees
14 May - 15 May
Holiday Inn Express San Diego Airport - Old Town by IHG

Brisa Pacific Hotel Encinitas

Brisa Pacific Hotel Encinitas
2.0 star property
32 km from Mission Bay
8.8 out of 10, Excellent, (1,002 reviews)
"Great stay "
United States
Patricia
The price is S$142
includes taxes & fees
13 May - 14 May
Brisa Pacific Hotel Encinitas

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.6 km from Mission Bay
7.4 out of 10, Good, (4,246 reviews)
"Great overall stay. Would stay again. "
United States
German
The price is S$130
includes taxes & fees
12 May - 13 May
Wyndham Garden San Diego Near SeaWorld

Wyndham San Diego Bayside

Wyndham San Diego Bayside
4.0 star property
8 km from Mission Bay
8.4 out of 10, Very good, (6,197 reviews)
"Great stay perfect location walkable to many things"
United States
Bianca
The price is S$255
includes taxes & fees
25 May - 26 May
Wyndham San Diego Bayside

Old Town Western Inn & Suites

Old Town Western Inn & Suites
2.5 star property
Old Town San Diego, 4 km from Mission Bay
7.8 out of 10, Good, (1,013 reviews)
"Very good area for visiting the area"
United States
Carla
The price is S$138
includes taxes & fees
18 May - 19 May
Old Town Western Inn & Suites

Best Western Plus Hacienda Hotel Old Town

Best Western Plus Hacienda Hotel Old Town
3.0 star property
Old Town San Diego, 3.7 km from Mission Bay
8.4 out of 10, Very good, (2,009 reviews)
"I highly recommend this hotel it is beautiful and the staff is great"
United States
Juanita
The price is S$182
includes taxes & fees
17 May - 18 May
Best Western Plus Hacienda Hotel Old Town

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
2.9 km from Mission Bay
8.6 out of 10, Excellent, (3,651 reviews)
"Will stay again"
United States
Louis
The price is S$157
includes taxes & fees
25 May - 26 May
Comfort Inn Sea World Area

Ocean Beach Hotel

Ocean Beach Hotel
3.0 star property
Ocean Beach, 4.2 km from Mission Bay
8.8 out of 10, Excellent, (1,349 reviews)
"Great location!"
United States
Paul
The price is S$257
includes taxes & fees
13 May - 14 May
Ocean Beach Hotel

Old Town Inn

Old Town Inn
2.5 star property
3.5 km from Mission Bay
9.2 out of 10, Wonderful, (1,879 reviews)
"Breakfast was decent for the price you pay per stay."
United States
Celia
The price is S$225
includes taxes & fees
13 May - 14 May
Old Town Inn
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

Mission Beach

If you're spending some time in Mission Beach, Mission Bay and Mission Beach are top sights worth seeing.

Gaslamp Quarter

The historic heart of San Diego has a fascinating history, and today is a thriving hub for food, retail and entertainment.

Ocean Beach

With a secluded sunbathing beach, swimming-only beach, special surf beach, volleyball beach and dog beach, San Diego’s “OB” sure takes beaches seriously.

Top Mission Bay Hotel Reviews

Frequently asked questions

What is Mission Bay like?
You'll be sure to have fun exploring San Diego's Mission Bay neighbourhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighbourhood.
What's a favourite hotel to stay in Mission Bay?
Based on our traveller data, Paradise Point Resort & Spa is one of the top choices for your stay in Mission Bay. This resort offers a marina and 5 outdoor pools. Other good options for your stay in the neighbourhood include Hyatt Regency Mission Bay Spa and Marina and The Dana on Mission Bay.
How many hotels should I expect to find in the Mission Bay area?
If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodation options to choose from.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes, you'll find most room reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might be able to still cancel and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then you can use the "fully refundable" filter to view top deals in Mission Bay.
What is there to do around this San Diego neighbourhood?
Enjoy a stroll along the shore at Mission and Pacific Beaches, Ski Beach and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or North Cove Beach while you're in the neighbourhood. Mission Beach and Hotel Circle are some popular places to visit in the area around Mission Bay. When you're sightseeing in San Diego, Bahia Point Beach and Bay City Brewing Co. are also worth a stop.