Hotels in Mission Bay

Start date: Check-in selected.
To Date
End date: Check-out
  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

This weekend
Next weekend

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Mission Bay hotels

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1583)
"Totally Recommend! Rooms are really clean and comfortable, the staff are great as well. "
United States
Fernando
The price is S$256
includes taxes & fees
10 Jan - 11 Jan, 2026
Hyatt Regency Mission Bay Spa and Marina

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1312)
"Room was super clean and updated, location up against the bay was perfect. We really enjoyed our stay and want to come back soon!"
United States
Haley
The price is S$275
includes taxes & fees
2 Jan - 3 Jan, 2026
San Diego Mission Bay Resort

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay
9.0 out of 10, Wonderful, (3938)
" Nice bay view from room, super friendly staff"
United States
Toshiyuki
The price is S$231
includes taxes & fees
4 Jan - 5 Jan, 2026
The Dana on Mission Bay

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay
8.6 out of 10, Excellent, (2358)
"Great stay, top tier service and excellent customer care "
Canada
Meriem
The price is S$259
includes taxes & fees
11 Jan - 12 Jan, 2026
Paradise Point Resort & Spa

The DEXTRO Little Italy, BW Premier Collection

The DEXTRO Little Italy, BW Premier Collection
3.0 star property
8.2 km from Mission Bay
8.8 out of 10, Excellent, (789)
"would stay again and recommend "
United States
Brendi
The price is S$167
includes taxes & fees
4 Jan - 5 Jan, 2026
The DEXTRO Little Italy, BW Premier Collection

Manchester Grand Hyatt San Diego

Manchester Grand Hyatt San Diego
4.0 star property
Marina District, 9 km from Mission Bay
9.0 out of 10, Wonderful, (2871)
"Lovely hotel with friendly staff."
United States
Lynnea
The price is S$332
includes taxes & fees
25 Dec - 26 Dec
Manchester Grand Hyatt San Diego

Comfort Inn San Diego Old Town

Comfort Inn San Diego Old Town
2.5 star property
Old Town San Diego, 4 km from Mission Bay
8.2 out of 10, Very good, (1914)
"Great stay "
United States
Vanessa
The price is S$112
includes taxes & fees
6 Jan - 7 Jan, 2026
Comfort Inn San Diego Old Town

Residence Inn by Marriott San Diego Downtown/Gaslamp Quarter

Residence Inn by Marriott San Diego Downtown/Gaslamp Quarter
3.0 star property
Gaslamp Quarter, 9.6 km from Mission Bay
9.0 out of 10, Wonderful, (1234)
"Nice Residence Inn"
United States
Terry
The price is S$136
includes taxes & fees
28 Dec - 29 Dec
Residence Inn by Marriott San Diego Downtown/Gaslamp Quarter

Wyndham San Diego Bayside

Wyndham San Diego Bayside
4.0 star property
8 km from Mission Bay
8.4 out of 10, Very good, (6021)
"Always an amazing stay"
United States
Jana
The price is S$239
includes taxes & fees
28 Dec - 29 Dec
Wyndham San Diego Bayside

DoubleTree by Hilton San Diego - Del Mar

DoubleTree by Hilton San Diego - Del Mar
4.0 star property
Carmel Valley, 17.8 km from Mission Bay
8.4 out of 10, Very good, (1911)
"Excellent location"
United States
Paolo
The price is S$143
includes taxes & fees
4 Jan - 5 Jan, 2026
DoubleTree by Hilton San Diego - Del Mar

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
2.5 star property
Pacific Beach, 2.9 km from Mission Bay
9.0 out of 10, Wonderful, (809)
"Good location, good basic breakfast, good parking, recommended. "
United States
Leyla
The price is S$152
includes taxes & fees
3 Jan - 4 Jan, 2026
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Hilton San Diego Bayfront

Hilton San Diego Bayfront
4.0 star property
Marina District, 10 km from Mission Bay
8.6 out of 10, Excellent, (1886)
"Enjoyed my stay"
United States
Brandon
The price is S$240
includes taxes & fees
4 Jan - 5 Jan, 2026
Hilton San Diego Bayfront

Staypineapple, Hotel Z, Gaslamp San Diego

Staypineapple, Hotel Z, Gaslamp San Diego
3.0 star property
Gaslamp Quarter, 9.4 km from Mission Bay
9.4 out of 10, Exceptional, (1000)
"Great location "
United States
Mohammad
The price is S$155
includes taxes & fees
6 Jan - 7 Jan, 2026
Staypineapple, Hotel Z, Gaslamp San Diego

Marriott Marquis San Diego Marina

Marriott Marquis San Diego Marina
4.0 star property
Marina District, 9.2 km from Mission Bay
9.2 out of 10, Wonderful, (1954)
"It's a great place to visit and share time with friends and family. "
United States
Bertha
The price is S$328
includes taxes & fees
3 Jan - 4 Jan, 2026
Marriott Marquis San Diego Marina

Hampton Inn San Diego-Downtown

Hampton Inn San Diego-Downtown
2.5 star property
7.8 km from Mission Bay
8.2 out of 10, Very good, (2303)
"Nice and convenient place to stay!"
United States
Esperanza
The price is S$154
includes taxes & fees
7 Jan - 8 Jan, 2026
Hampton Inn San Diego-Downtown

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.6 km from Mission Bay
7.4 out of 10, Good, (4119)
"Get location to the airport, safe, great staff, & overall wonderful stay"
United States
Tyler
The price is S$131
includes taxes & fees
25 Dec - 26 Dec
Wyndham Garden San Diego Near SeaWorld

Kings Inn San Diego

Kings Inn San Diego
2.5 star property
4.9 km from Mission Bay
8.8 out of 10, Excellent, (3571)
"Clean and the amenities were outstanding, the staff was polite and helpful 👍 "
United States
walter
Kings Inn San Diego

Hard Rock Hotel San Diego

Hard Rock Hotel San Diego
4.0 star property
Gaslamp Quarter, 9.7 km from Mission Bay
9.0 out of 10, Wonderful, (3160)
"Beautiful hotel"
United States
Jordan M.
The price is S$284
includes taxes & fees
1 Jan - 2 Jan, 2026
Hard Rock Hotel San Diego

Days Inn by Wyndham San Diego Hotel Circle

Days Inn by Wyndham San Diego Hotel Circle
3.0 star property
5.5 km from Mission Bay
8.0 out of 10, Very good, (2434)
"Clean room and excellent service "
United States
Jaime
The price is S$124
includes taxes & fees
4 Jan - 5 Jan, 2026
Days Inn by Wyndham San Diego Hotel Circle

DoubleTree by Hilton Hotel San Diego - Mission Valley

DoubleTree by Hilton Hotel San Diego - Mission Valley
4.0 star property
6 km from Mission Bay
8.4 out of 10, Very good, (1422)
"Great hotel in a great area - would definitely stay here again."
United States
Bhupinder
The price is S$166
includes taxes & fees
3 Jan - 4 Jan, 2026
DoubleTree by Hilton Hotel San Diego - Mission Valley
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

Gaslamp Quarter

The historic heart of San Diego has a fascinating history, and today is a thriving hub for food, retail and entertainment.

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

Mission Beach

If you're spending some time in Mission Beach, Mission Bay and Mission and Pacific Beaches are top sights worth seeing.

Ocean Beach

With a secluded sunbathing beach, swimming-only beach, special surf beach, volleyball beach and dog beach, San Diego’s “OB” sure takes beaches seriously.

Top Mission Bay Hotel Reviews

Frequently asked questions

What is Mission Bay like?
You'll be sure to have fun exploring San Diego's Mission Bay neighbourhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighbourhood.
What's a favourite hotel to stay in Mission Bay?
Based on Expedia customer reviews, Paradise Point Resort & Spa is the highest ranked property in Mission Bay. This resort offers a marina and 5 outdoor pools. Other favourite options in the area include San Diego Mission Bay Resort and Hyatt Regency Mission Bay Spa and Marina.
How many hotels should I expect to find in the Mission Bay area?
If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodation options to choose from.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes, you'll find most room reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might be able to still cancel and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then you can use the "fully refundable" filter to view top deals in Mission Bay.
What is there to do around this San Diego neighbourhood?
Enjoy a stroll along the shore at Mission and Pacific Beaches, Ski Beach and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or North Cove Beach while you're in the neighbourhood. Hotel Circle, Bahia Point Beach and Bay City Brewing Co. are just a few of the places to visit in and around Mission Bay. When you're sightseeing in San Diego, Sail Bay and Mission Bay Golf Course are also worth a stop.