Independent, San Juan Islands hotels
Change your mindBook hotels with free cancellation
Be pickySearch almost a million properties worldwide
Check prices for these dates
Tonight
1 Sept - 2 SeptTomorrow
2 Sept - 3 SeptThis weekend
4 Sept - 6 SeptNext weekend
11 Sept - 13 Sept
Save an average of 15% on thousands of hotels when you're signed in
Top San Juan Islands Hotel Reviews
Rosario Resort
8/10 Good
"We had a nice stay. The rooms are a little outdated, but it didn't bother us. It was all that we needed. The view was the best part. Would stay here again!"
Bird Rock Hotel
10/10 Excellent
"Highly recommend this hotel. Staff is very responsive and friendly. Hotel is in the place you want to stay in Friday Harbor. Shared bathrooms were not an issue at all. Loved it, thank you!!"
The Orca Inn
10/10 Excellent
"Great retro motel close to everything in town"
Friday Harbor Suites
10/10 Excellent
"Great place to stay while visiting Friday Harbor"
Lopez Islander Resort
10/10 Excellent
"The room was spacious, clean, and had a wonderful view of the harbor. It was quiet. The room had a coffee maker and a refrigerator. The staff was extremely nice and helpful. I would definitely stay there again."
Friday Harbor House
10/10 Excellent
"Great hotel. Great staff."
Discovery Inn
10/10 Excellent
"Well appointed and friendly hotel. Conveniently located, minutes from the main commercial area of Friday Harbor. Alexis (owner) is very friendly and hospitable. Highly recommended."
Landmark Inn on Orcas Island
10/10 Excellent
"This property is clean and close to the water. There is amble parking and easy walk to town for meals and fun. Kitchen was roomy and plenty of utensils and cookware on hand. Roomy bathroom."
Deer Harbor Inn
10/10 Excellent
"This hotel is full of charm. Loved it from the minute we pulled up on our bikes and saw all the party lights the barbecue and the live music and picnic tables to our darling cozy bedroom, and awesome comfy mattress."
Explore a world of travel with Expedia
- Anacortes Hotels
- Gay friendly Hotels in Bellingham City Center
- Hotels near Bellingham Cruise Terminal
- Budget Hotels in Bellingham
- Gay friendly Hotels in Bellingham
- Hotels with smoking rooms in Bellingham
- Bellingham Hotels
- Beach Resorts in Birch Bay
- Birch Bay Hotels
- Blakely Island Hotels
- Bow Hotels
- Hotels near Clayton Beach
- Coupeville Hotels
- Eastsound Hotels
- Ferndale Hotels
- Pet friendly Hotels in Fidalgo Island
- Friday Harbor Hotels
- Resorts in Friday Harbor
- Casino Hotels in La Conner
- La Conner Hotels
- Lopez Island Hotels
- Lummi Island Hotels
- Beach Resorts in Mount Vernon
- Mount Vernon Hotels
- Oak Harbor Hotels
- Olga Hotels
- Hotels near Orcas Island
- Capsule Hotels in Orcas Island
- Resorts in Orcas Island
- Villas in Orcas
- Resorts in Point Roberts
- Hyatt Hotels in Port Angeles
- Roche Harbor Hotels
- Rosario Hotels
- Country Houses in Samish Island
- Inns in Samish Island
- Adults Only Hotels in San Juan Island
- Cabin Rentals in San Juan Islands
- Pet friendly Hotels in San Juan Islands
- Hotels near San Juan Islands Sculpture Park
- West Sound Hotels
- Flights to Bellingham
- Flights to Custer
- Flights to Ferndale
- Flights to Friday Harbor
- Flights to Mount Vernon
- Flights to Northwest Washington
- Flights to Orcas Island
- Flights to Orcas
- Flights to San Juan Islands
- Flights to Sucia Island
- Flights from Ferndale
- Flights from Lummi Island
- Flights from Oak Harbor
- Flights from Anacortes
- Flights from Whatcom County
- Flights from La Conner
- Flights from Orcas Island
- Flights from Bellingham
- Flights from Mount Vernon
- Flights from Boise (BOI) to Bellingham (BLI)
- Flights from London (LHR) to Anacortes (OTS)
- Flights from Oakland (OAK) to Bellingham (BLI)
- Flights from Seattle (SEA) to Bellingham (BLI)
- Flights from San Francisco (SFO) to Bellingham (BLI)
- Flights from Weyers Cave (SHD) to Lopez Island (LPS)
- Flights from St. Cloud (STC) to Bellingham (BLI)
- Flights from Vancouver (YVR) to Bellingham (BLI)
- Car hire in Avis 1333 N Highland Ave
- Car hire Bellingham
- Car hire Bow
- Car hire Friday Harbor
- Car hire Mount Vernon
- Dollar Rental Cars in San Juan Island
- Easirent.com Rental Cars in Fidalgo Island
- Car hire in Enterprise 551 Daybrite Dr
- Hertz Rental Cars in Northwest Washington
- Nextcar Rental Cars in San Juan Islands
- Priceless Car Rental Rental Cars in Orcas Island