⭐ Top 10 Hotels Near Shelter Island for 2026

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Our top choices for Shelter Island hotels

A balcony with a table set for two, overlooking a marina with numerous boats.

A marina with multiple boats docked, a multi-story building with outdoor seating, and a clear view of the surrounding coastline.

A modern hotel room with a balcony, a sofa, a chair, a coffee table, and two bedside tables with lamps.

A pool area with lounge chairs and umbrellas, overlooking a marina with numerous boats.

1. Bay Club Hotel & Marina

0.7 km from Shelter Island

Jennifer

S$250

includes taxes & fees

29 Sept - 30 Sept

A hotel complex with multiple buildings, a landscaped garden, and a body of water reflecting the sunset.

A pool area with lounge chairs, a palm tree, and a view of a bridge and buildings in the background.

A modern kitchen area with wooden cabinets, marble countertops, and a central island with plates.

A hotel with a well-maintained lawn, outdoor lighting, and a clear view of the building's facade.

2. Homewood Suites by Hilton San Diego Airport/Liberty Station

2.4 km from Shelter Island

Orlyn

S$288

includes taxes & fees

1 Oct - 2 Oct

3. Hampton Inn & Suites San Diego Airport Liberty Station

2.7 km from Shelter Island

Ana Lopez

S$281

includes taxes & fees

28 Sept - 29 Sept

A resort with two-story buildings, balconies, and a pool area.

A resort with a pool, palm trees, and a building with multiple balconies.

A canal lined with palm trees and a row of buildings with balconies.

A restaurant with a view of a marina, featuring high ceilings, modern lighting, and a central chandelier.

4. Humphreys Half Moon Inn

1 km from Shelter Island

Johnny

S$303

includes taxes & fees

5 Oct - 6 Oct

A modern building with a sloped roof and large windows, surrounded by palm trees and a well-maintained garden.

A spacious lobby with a high ceiling, stone flooring, and wicker furniture.

An outdoor patio with round tables and chairs, large umbrellas, and a marina view in the background.

A hotel entrance with a modern design, palm trees, and a sign indicating it is part of the Best Western Plus chain.

5. Best Western Plus Island Palms Hotel & Marina

0.4 km from Shelter Island

Michael

S$223

includes taxes & fees

5 Oct - 6 Oct

An outdoor terrace with tables and chairs, string lights, and a view of the marina.

A dining table set with plates, glasses, and a bottle of wine, overlooking a marina with boats.

A marina with boats, a hotel with a white facade, and a city skyline in the background.

A coastal view with a clear sky, a marina with boats, and a building with a balcony.

6. Hilton San Diego Airport/Harbor Island

2.5 km from Shelter Island

Amos

S$283

includes taxes & fees

4 Oct - 5 Oct

A spacious lounge area with a high ceiling, a fireplace, and large windows offering a view of the outdoors.

A hotel pool area with lounge chairs and umbrellas, surrounded by palm trees and a brick walkway.

A spacious hotel lobby with a geometric patterned carpet, leather armchairs, a sofa, and a dining table. Large windows offer views of the outside.

A modern aquarium with a celestial-themed backdrop.

7. TownePlace Suites by Marriott San Diego Airport/Liberty Station

2.8 km from Shelter Island

Catalina

S$272

includes taxes & fees

27 Sept - 28 Sept

A building with a sign reading "the Pearl" and a modern architectural style.

A modern bedroom with a bed, a TV mounted on the wall, and a window with curtains.

A poolside area with a bar and outdoor seating, surrounded by a building with a balcony and string lights.

A modern interior with a stone wall, leather sofa, and pendant lighting.

8. The Pearl Hotel

1.6 km from Shelter Island

Tara

S$226

includes taxes & fees

30 Sept - 1 Oct

A well-lit retail area with shelves displaying various products, a poolside view, and a palm tree.

A modern hotel lobby with white furniture, wooden flooring, and a reception desk.

A marina filled with numerous boats, a distant city skyline, and a clear blue sky.

A modern, well-lit room with a dining area, kitchenette, and a large window offering a city view.

9. Sea Harbor Hotel

1.4 km from Shelter Island

Kassandra

S$183

includes taxes & fees

27 Sept - 28 Sept

A square pizza on a wooden board with a fire pit in the background.

A spacious indoor dining area with high ceilings, wooden beams, and a mix of booth and table seating.

A hotel with a courtyard featuring palm trees, a golf course, and a building with balconies.

A hotel with a well-maintained lawn, palm trees, and a pool area.

10. DoubleTree by Hilton San Diego Bayside

1.8 km from Shelter Island

Akosua

S$227

includes taxes & fees

28 Sept - 29 Sept

A hotel room with two beds, a desk, a chair, and a large window with a view of the outdoors.

A modern hotel room with a blue sofa, a grey armchair, a round coffee table, and a large window offering a view of the outdoors.

A gym with a treadmill, elliptical, and weight machines.

A modern kitchen with a coffee station, a dining area with a large table and chairs, and a carpeted floor.

11. Best Western Yacht Harbor Hotel

1.7 km from Shelter Island

Arturo

S$221

includes taxes & fees

22 Oct - 23 Oct

A rooftop terrace with outdoor seating, a view of the marina, and a modern building with large windows.

A modern restaurant with a long wooden bar, black bar stools, and a mix of seating options including a bench and individual chairs.

A hotel room with two beds, a view of the city, a dining area, and a large window.

A bar area with a long wooden table, multiple bar stools, and a variety of liquor bottles and glasses.

12. The Monsaraz San Diego, Tapestry Collection by Hilton

1.6 km from Shelter Island

Alexa

S$209

includes taxes & fees

28 Sept - 29 Sept

A balcony with a sofa, chairs, and a small table, overlooking a clear blue sky and palm trees.

A neatly made bed with white linens and multiple pillows, a bedside table with a clock and books, and a wall-mounted lamp.

A multi-level interior with a staircase, black railings, and hanging lights.

A hotel with a sign reading 'LYFE INN SUITES,' a two-story structure with a balcony on the second floor, and a parking lot in front.

13. LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

1.2 km from Shelter Island

Carolina

S$154

includes taxes & fees

23 Sept - 24 Sept

A marina with boats, a yacht, and a balcony with two chairs and a table.

A pool area with lounge chairs and umbrellas, a bar, and a view of boats in the background.

A bar area with a curved ceiling, hanging light fixtures, and a large screen displaying a tropical scene.

A large, domed building with a central fountain, surrounded by well-maintained gardens and a calm reflective pool.

14. Kona Kai San Diego

0.2 km from Shelter Island

Edward

S$366

includes taxes & fees

14 Oct - 15 Oct

An aerial view of a marina with numerous boats docked, surrounded by a residential area with buildings and streets.

A restaurant with a breakfast bar, ceiling fans, and a kitchen area with appliances.

A hotel rooftop with a swimming pool, outdoor seating, and a view of the marina and cityscape.

A hotel room with two beds, a desk, a chair, a TV, and a window with blinds.

15. Comfort Inn San Diego Airport At The Harbor

1.6 km from Shelter Island

Robert

S$152

includes taxes & fees

29 Sept - 30 Sept

A marina with numerous boats docked, a clear sky with the sun setting, and a cityscape in the background.

A hotel room with a large bed, a red armchair, a balcony with a view of boats and buildings, and a lamp on the nightstand.

A hotel room with a large bed, two bedside tables with lamps, a wardrobe, and a bench.

A kitchen with wooden cabinets, a microwave, a coffee machine, and a refrigerator.

16. Ramada by Wyndham San Diego Airport

1.6 km from Shelter Island

Aaron

S$151

includes taxes & fees

28 Sept - 29 Sept

Blackout curtains, iron/ironing board (on request), free WiFi

17. Hotel Point Loma

1.5 km from Shelter Island

Vannika

S$142

includes taxes & fees

28 Sept - 29 Sept

18. Hotel Aqua Mar

1.7 km from Shelter Island

Kathryn

An outdoor patio area with seating arrangements, a pergola, and a green wall.

A two-story building with a colorful facade, a large peace sign above the entrance, and a pink picket fence in front.

A hotel room with a bed, a chair, a small table, a plant, and a door leading to a bathroom.

A hallway with wooden flooring, a framed artwork of a turtle, and a trash bin.

19. Samesun Ocean Beach - Hostel

Ocean Beach, 4.3 km from Shelter Island

linda

S$86

includes taxes & fees

14 Oct - 15 Oct

A couple walking hand in hand on a sandy beach with the ocean in the background.

A hotel entrance with a covered patio, outdoor seating, and large flower planters.

A pathway flanked by lush tropical plants and a building with a large archway.

A cozy living room with a fireplace, a sofa, a dining table, and a chair.

20. 1906 Lodge

5.9 km from Shelter Island

Bryan Huy

S$380

includes taxes & fees

28 Sept - 29 Sept

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Compare popular hotels close to Shelter Island

Property	Property class	Guest rating
Bay Club Hotel & Marina	9.2 Wonderful 3,949 reviews	View
Homewood Suites by Hilton San Diego Airport/Liberty Station	9.4 Exceptional 1,688 reviews	View
Hampton Inn & Suites San Diego Airport Liberty Station	9.2 Wonderful 1,713 reviews	View
Humphreys Half Moon Inn	9.2 Wonderful 3,125 reviews	View
Best Western Plus Island Palms Hotel & Marina	9.0 Wonderful 1,625 reviews	View

Top Shelter Island Hotel Reviews

Sea Harbor Hotel

10/10 Excellent

"Nice large room with kitchenette, Very nice location, with plenty of places to hang out and dine"

Comfort Inn San Diego Airport At The Harbor

10/10 Excellent

"Nice and well located"

Homewood Suites by Hilton San Diego Airport/Liberty Station

10/10 Excellent

"Excellent hotel. Great location. My only complaint is that we got a room right next to the mechanical room & elevator and it was so loud all night as well as hearing all the airplanes."

Best Western Plus Island Palms Hotel & Marina

8/10 Good

"Our bathroom was not in good shape. There was an odor that we couldn't distinguish what it was and the bathtub spout didn't close up all the way so the shower wasn't working properly. Everything else was fine"

Wyndham San Diego Bayside

10/10 Excellent

"Love staying here every time we come to SD! We come at least once a year and it's always such a pleasant experience. The staff is always friendly and helpful which we really appreciate 😊 The rooms are always clean, and I love that they provide a rubber mat for the bathtub. There's also shampoo, conditioner and body wash in the bathrooms which is a big plus for me 😁 Looking forward to our next visit. 👍"

Best Western Yacht Harbor Hotel

10/10 Excellent

"The property was clean and comfortable. Parking was very convenient and covered in the cost of the room. It's close to so many things on Point Loma. Easy to get around by car or Uber. My friends and I stayed for the Yacht Rock Festival at Liberty Station. I would stay there again."

LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

10/10 Excellent

"I absolutely LOVE this property. Free parking for the hotel and plenty of street parking. Many local businesses that are walkable + the best part is the coffee shop downstairs. I have stayed here multiple times and the room is always VERY clean. Beds are comfy. My favorite part is the large TVs. Don’t expect 24/7 concierge at your service. If you need a nice clean space to stay with no hassle parking + walkable eats this place is for you!"

Hotel Aqua Mar

8/10 Good

"Unable to contact front desk"

Hotel Point Loma

8/10 Good

"Clean room, check in and check out was fast"

Other attractions near Shelter Island

Sunset Cliffs Natural Park

You can take time to visit Sunset Cliffs Natural Park during your travels to San Diego. Wander the seaside and beautiful beaches in the area.

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Vessel Restaurant

After visiting Vessel Restaurant, make a plan to see the other sights and activities in San Diego. In the area, take in the great live music and beautiful sunsets.

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Kellogs Beach

Why not spend a lazy afternoon at Kellogs Beach during your trip to San Diego? Wander the seaside and beautiful beaches in the area.

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Humphreys Concerts by the Bay

7.4/10 (6 reviews)

You can enjoy a show at Humphreys Concerts by the Bay on your trip to San Diego. Discover the beautiful sunsets and top-notch restaurants in this walkable area.

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Humphreys Backstage Live

Humphreys Backstage Live is just one of the places to see in San Diego, so why not enjoy the other things to explore during your travels? Stroll along the waterfront or discover the area's beautiful sunsets.

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USS Recruit

You can spend time exploring the galleries in USS Recruit during your trip to San Diego. Stroll along the area's marina or experience its great live music.

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Liberty Station Conference Center

Learn about the events happening in Liberty Station Conference Center during your trip to San Diego. Wander the seaside and beautiful beaches in the area.

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Frequently asked questions

What's the area like around Shelter Island?

Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, take a look at the 39 hotels and other accommodation options you'll find within a mile.

What's the best place to stay near Shelter Island?

Adjacent to Shelter Island, Best Western Plus Island Palms Hotel & Marina is one of the top choices for your stay based on our traveller data, and this hotel offers a marina and 2 outdoor pools. Other good choices within a short distance include Bay Club Hotel & Marina and Humphreys Half Moon Inn.

How many hotels will I be able to find near Shelter Island?

Expedia has 39 hotels and other accommodation options within a mile from Shelter Island.

If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?

Yes! Most hotel room reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of your booking. Add dates, click "Search", then you can use the "fully refundable" filter to get the best deals near Shelter Island.

What can I see and do near Shelter Island?

You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego or San Diego Air and Space Museum. Explore notable local landmarks like Hotel del Coronado, Point Loma Lighthouse and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park and San Diego Civic Theatre.

Hotels near Shelter Island

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Treat yourself

Be picky

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Our top choices for Shelter Island hotels

1. Bay Club Hotel & Marina

2. Homewood Suites by Hilton San Diego Airport/Liberty Station

3. Hampton Inn & Suites San Diego Airport Liberty Station

4. Humphreys Half Moon Inn

5. Best Western Plus Island Palms Hotel & Marina

6. Hilton San Diego Airport/Harbor Island

7. TownePlace Suites by Marriott San Diego Airport/Liberty Station

8. The Pearl Hotel

9. Sea Harbor Hotel

10. DoubleTree by Hilton San Diego Bayside

11. Best Western Yacht Harbor Hotel

12. The Monsaraz San Diego, Tapestry Collection by Hilton

13. LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

14. Kona Kai San Diego

15. Comfort Inn San Diego Airport At The Harbor

16. Ramada by Wyndham San Diego Airport

17. Hotel Point Loma

18. Hotel Aqua Mar

19. Samesun Ocean Beach - Hostel

20. 1906 Lodge

Compare popular hotels close to Shelter Island

Top Shelter Island Hotel Reviews

Sea Harbor Hotel

Comfort Inn San Diego Airport At The Harbor

Homewood Suites by Hilton San Diego Airport/Liberty Station

Best Western Plus Island Palms Hotel & Marina

Wyndham San Diego Bayside

Best Western Yacht Harbor Hotel

LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

Hotel Aqua Mar

Hotel Point Loma

Other attractions near Shelter Island

Sunset Cliffs Natural Park

Vessel Restaurant

Kellogs Beach

Humphreys Concerts by the Bay

Humphreys Backstage Live

USS Recruit

Liberty Station Conference Center

Frequently asked questions