A lakeside lodge with a wooden pier, surrounded by lush greenery and a forested backdrop.

Boutique Hotels in San Juan Island

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check availability on San Juan Island Boutique Hotels

Tonight
25 Sept - 26 Sept
Tomorrow
26 Sept - 27 Sept
This weekend
25 Sept - 27 Sept
Next weekend
2 Oct - 4 Oct
No exact matches found, but these alternatives could be just right

Recommended hotels in San Juan Island

A building with a covered outdoor area, red doors, and hanging flower baskets.
A pool area with a wooden deck, surrounded by trees with pinkish leaves.
A hotel room with a grey armchair, a small round table, a bedside table, a lamp, and a potted plant.
A two-story building with a balcony, surrounded by a well-maintained garden with various plants and flowers.

1. Discovery Inn

Discovery Inn
Friday Harbor
United States
Robert
S$240
includes taxes & fees
14 Oct - 15 Oct
Discovery Inn
A motel with a row of rooms, a parking lot, and blooming flowers in the foreground.
A hallway with an exit sign, a statue, and a Starbucks sign on the wall.
A bathroom with a shower, a towel rack, and a shelf with a towel.
A room with two beds, wooden walls, and a window.

2. The Orca Inn

The Orca Inn
Friday Harbor
United States
Andrew
S$137
includes taxes & fees
8 Oct - 9 Oct
The Orca Inn
A serene outdoor seating area with a table and chairs, surrounded by lush greenery and a tree.
A dining table set with plates of food, glasses, and a vase of flowers.
A grassy area with a pond, trees, and a red chair.
A spacious entryway with a wooden staircase, a patterned rug, and potted plants.

3. Trumpeter Inn

Trumpeter Inn
Friday Harbor
United States
James
S$324
includes taxes & fees
4 Oct - 5 Oct
Trumpeter Inn
A wooden cabin interior with a dining table, chairs, and a bench.
A marina with boats docked, surrounded by forested hills and a small building complex.
A cozy cabin interior with a large window overlooking a lake, a fireplace, and a comfortable seating area.
A lodge with multiple cabins, a dock, and a surrounding forest.

4. Snug Harbor Resort

Snug Harbor Resort
Friday Harbor
United States
Patricia
S$344
includes taxes & fees
20 Oct - 21 Oct
Snug Harbor Resort
A living room with a sofa, armchairs, a coffee table, and a fireplace.
A landscaped garden with neatly trimmed hedges, a white picket fence, and a wooden signboard.
A waterfront promenade with benches, a gazebo, and a large white boat docked at a pier.
A hotel lobby with a reception desk, seating area, and a view of the adjacent room.

5. Earthbox Inn & Spa

Earthbox Inn & Spa
Friday Harbor
United States
Amy
S$325
includes taxes & fees
4 Oct - 5 Oct
Earthbox Inn & Spa
A two-story house with a front porch, a picket fence, and a small garden area.
A balcony with a hot tub, two chairs, and a table set with plates, glasses, and a bottle.
A conservatory with a dining table set for four, surrounded by white chairs, and a lamp on the right.
A cozy room with a wooden ceiling, a bed with a quilt, a sofa with cushions, a table with a board game, and a window with shutters.

6. Tucker House Inn

Tucker House Inn
Friday Harbor
United States
ZACHARY
S$204
includes taxes & fees
20 Oct - 21 Oct
Tucker House Inn
A marina with boats, a cruise ship, and a forested island.
A white building with a balcony, potted plants, and a stone pathway.
A kitchen with wooden cabinets, a built-in microwave, and a coffee station.
A living room with a sectional sofa, a coffee table, a lamp, and a potted plant.

7. Bird Rock Hotel

Bird Rock Hotel
Friday Harbor
United States
Vanessa
S$226
includes taxes & fees
4 Oct - 5 Oct
Bird Rock Hotel
A modern interior with sofas, a table, and hanging plants.
A covered outdoor swimming pool area with a hot tub, benches, and emergency exit signs.
A modern interior with a stone fireplace, hanging lamps, and a sign indicating the property is for sale.
A living room with a stone fireplace, a large window, a dark gray sofa, and a wooden coffee table.

8. Friday Harbor Suites

Friday Harbor Suites
Friday Harbor
United States
Jennifer
S$254
includes taxes & fees
5 Oct - 6 Oct
Friday Harbor Suites
A marina with boats docked in a structured layout, surrounded by water and a distant cityscape.
A waterfront hotel with multiple docked boats, a pier, and a view of the surrounding forested area.
A serene lakeside setting with string lights, wicker chairs, and a fire pit area.
A restaurant with tables set for dining, large windows offering a view of boats and greenery.

9. Roche Harbor Resort

Roche Harbor Resort
Friday Harbor
United States
Nicco
S$317
includes taxes & fees
20 Oct - 21 Oct
Roche Harbor Resort
Two people relaxing by a fire pit with a view of a harbor and a large ship.
A couple in white bathrobes sitting on a bed with a textured headboard, two wall-mounted lamps, and a decorative wall piece.
A bar area with a large TV screen displaying a landscape, a bookshelf with books and bottles, and leather chairs.
A bar area with shelves of bottles and glasses, a counter with a fruit bowl, and tables with chairs.

10. Friday Harbor House

Friday Harbor House
Friday Harbor
United States
Robert
S$558
includes taxes & fees
11 Oct - 12 Oct
Friday Harbor House
View all properties

Top San Juan Island Hotel Reviews

Explore a world of travel with Expedia