Independent, San Juan Island hotels
Change your mindBook hotels with free cancellation
Be pickySearch almost a million properties worldwide
Check prices for these dates
Tonight
24 Aug - 25 AugTomorrow
25 Aug - 26 AugThis weekend
28 Aug - 30 AugNext weekend
4 Sept - 6 Sept
Save an average of 15% on thousands of hotels when you're signed in
Top San Juan Island Hotel Reviews
The Orca Inn
10/10 Excellent
"The room was clean, the bed was comfy, and the air conditioner was perfect as a white noise generator as well as room cooler. Building 2 has the quietest rooms."
Best Western Plus Oak Harbor Hotel & Conference Center
10/10 Excellent
"Great location and convenient breakfast. Clean room. Very comfortable."
Friday Harbor Suites
8/10 Good
"Comfy and good quality overall! A bit weird with how the hallways have a staggered layout, and with how soft the bed mattresses were."
Auld Holland Inn
10/10 Excellent
"Stayed in one of the cabins, the bed was a bit small, butt all was good."
Anacortes Inn
10/10 Excellent
"Such a cute place, perfect for one night! Tye young lady that checked us in after 3 pm very nice and helpful! Would stay again!"
Discovery Inn
10/10 Excellent
"Impeccably clean room and finally, a comfy mattress!! I was so thrilled to have a peaceful room to come back to after long adventuring days on the island, can’t wait to come back!"
Coachman Inn & Suites
10/10 Excellent
"Awesome. Quiet. Convenient. Friendly staff. Would stay again."
Cap Sante Inn
10/10 Excellent
"The rooms are spacious and the bed is comfy . The check-in was easy and the staff is incredible. The one thing about the rooms, they back up to a busy road , so expect some noise. But if you’re like me , you don’t really hear it , once you’re asleep."
Inn to the Woods B&B
10/10 Excellent
"Loved this place! We honeymooned here and had an excellent relaxed stay. We liked the hot tub at night! The hosts were very accommodating. Breakfast was intimate with great atmosphere. 10/10 will stay again!"
Explore a world of travel with Expedia
- Anacortes Hotels
- Gay friendly Hotels in Bellingham City Center
- Hotels near Bellingham Cruise Terminal
- Budget Hotels in Bellingham
- Gay friendly Hotels in Bellingham
- Hotels with smoking rooms in Bellingham
- Bellingham Hotels
- Beach Resorts in Birch Bay
- Birch Bay Hotels
- Blakely Island Hotels
- Bow Hotels
- Carlsborg Hotels
- Hotels near Clayton Beach
- Coupeville Hotels
- Cottages in Dungeness
- Eastsound Hotels
- Ferndale Hotels
- Pet friendly Hotels in Fidalgo Island
- Friday Harbor Hotels
- Resorts in Friday Harbor
- Casino Hotels in La Conner
- La Conner Hotels
- Lopez Island Hotels
- Lummi Island Hotels
- Oak Harbor Hotels
- Olga Hotels
- Hotels near Orcas Island
- Capsule Hotels in Orcas Island
- Resorts in Orcas Island
- Villas in Orcas
- Resorts in Point Roberts
- Hyatt Hotels in Port Angeles
- Roche Harbor Hotels
- Rosario Hotels
- Country Houses in Samish Island
- Inns in Samish Island
- Adults Only Hotels in San Juan Island
- Cabin Rentals in San Juan Islands
- Pet friendly Hotels in San Juan Islands
- Hotels near San Juan Islands Sculpture Park
- Private Holiday Homes in Sequim
- Sequim Hotels
- West Sound Hotels
- Flights to Bellingham
- Flights to Custer
- Flights to Ferndale
- Flights to Friday Harbor
- Flights to Northwest Washington
- Flights to Orcas Island
- Flights to Orcas
- Flights to San Juan Islands
- Flights to Sucia Island
- Flights from Ferndale
- Flights from Lummi Island
- Flights from Oak Harbor
- Flights from Anacortes
- Flights from Whatcom County
- Flights from La Conner
- Flights from Orcas Island
- Flights from Bellingham
- Flights from Boise (BOI) to Bellingham (BLI)
- Flights from London (LHR) to Anacortes (OTS)
- Flights from Oakland (OAK) to Bellingham (BLI)
- Flights from Seattle (SEA) to Bellingham (BLI)
- Flights from San Francisco (SFO) to Bellingham (BLI)
- Flights from Weyers Cave (SHD) to Lopez Island (LPS)
- Flights from St. Cloud (STC) to Bellingham (BLI)
- Flights from Vancouver (YVR) to Bellingham (BLI)
- Car hire in Avis 1333 N Highland Ave
- Car hire Bellingham
- Car hire Bow
- Car hire Friday Harbor
- Dollar Rental Cars in San Juan Island
- Easirent.com Rental Cars in Fidalgo Island
- Car hire in Enterprise 551 Daybrite Dr
- First Car Rental Rental Cars in Diamond Point
- Hertz Rental Cars in Northwest Washington
- Nextcar Rental Cars in San Juan Islands
- Priceless Car Rental Rental Cars in Orcas Island