Boutique Hotels in San Juan Islands
Change your mindBook hotels with free cancellation
Be pickySearch almost a million properties worldwide
Check availability on San Juan Islands Boutique Hotels
Tonight
10 Aug - 11 AugTomorrow
11 Aug - 12 AugThis weekend
14 Aug - 16 AugNext weekend
21 Aug - 23 AugOur top choices for San Juan Islands boutique hotels
S$164
includes taxes & fees
11 Aug - 12 Aug
S$334
includes taxes & fees
10 Sept - 11 Sept
S$413
includes taxes & fees
12 Aug - 13 Aug
S$337
includes taxes & fees
17 Aug - 18 Aug
S$405
includes taxes & fees
11 Aug - 12 Aug
S$383
includes taxes & fees
31 Aug - 1 Sept
S$368
includes taxes & fees
7 Sept - 8 Sept
S$290
includes taxes & fees
3 Sept - 4 Sept
View all properties
Top San Juan Islands Hotel Reviews
The Edenwild Boutique Inn
8/10 Good
"Lovely place to stay and great location. Large, bright room and friendly owner. Note, 'tho, that there is no AC. It got pretty warm in our upstairs room."
Bird Rock Hotel
10/10 Excellent
"First time on SJI. Loved it. Birdrock is a perfect location and vibe for our visit."
Explore a world of travel with Expedia
- Anacortes Hotels
- Gay friendly Hotels in Bellingham City Center
- Hotels near Bellingham Cruise Terminal
- Budget Hotels in Bellingham
- Gay friendly Hotels in Bellingham
- Hotels with smoking rooms in Bellingham
- Bellingham Hotels
- Beach Resorts in Birch Bay
- Birch Bay Hotels
- Gay friendly Hotels in Blaine
- Blakely Island Hotels
- Bow Hotels
- Hotels near Clayton Beach
- Eastsound Hotels
- Hotels with Spa in Everson
- Ferndale Hotels
- Pet friendly Hotels in Fidalgo Island
- Friday Harbor Hotels
- Resorts in Friday Harbor
- Casino Hotels in La Conner
- La Conner Hotels
- Lopez Island Hotels
- Lummi Island Hotels
- Gay friendly Hotels in Lynden
- Beach Resorts in Mount Vernon
- Oak Harbor Hotels
- Olga Hotels
- Hotels near Orcas Island
- Capsule Hotels in Orcas Island
- Resorts in Orcas Island
- Villas in Orcas
- Hotels with connecting rooms in Port Angeles
- Pet friendly Hotels in Port Ludlow
- Gay friendly Hotels in Port Townsend
- Hotels with Views in Port Townsend
- Roche Harbor Hotels
- Rosario Hotels
- Country Houses in Samish Island
- Inns in Samish Island
- Adults Only Hotels in San Juan Island
- Cabin Rentals in San Juan Islands
- Pet friendly Hotels in San Juan Islands
- Hotels near San Juan Islands Sculpture Park
- Hotels with Bars / Lounges in Sedro-Woolley
- Gay friendly Hotels in Sequim
- Hotels with kitchenette in Sequim
- West Sound Hotels
- Pet friendly Hotels in Whidbey Island
- Flights to Bellingham
- Flights to Ferndale
- Flights to Friday Harbor
- Flights to Northwest Washington
- Flights to Orcas Island
- Flights to Orcas
- Flights to San Juan Islands
- Flights to Sucia Island
- Flights from Ferndale
- Flights from Lummi Island
- Flights from Oak Harbor
- Flights from Anacortes
- Flights from Whatcom County
- Flights from La Conner
- Flights from Orcas Island
- Flights from Bellingham
- Flights from Boise (BOI) to Bellingham (BLI)
- Flights from London (LHR) to Anacortes (OTS)
- Flights from Oakland (OAK) to Bellingham (BLI)
- Flights from Seattle (SEA) to Bellingham (BLI)
- Flights from San Francisco (SFO) to Bellingham (BLI)
- Flights from Weyers Cave (SHD) to Lopez Island (LPS)
- Flights from St. Cloud (STC) to Bellingham (BLI)
- Flights from Vancouver (YVR) to Bellingham (BLI)
- Car hire in Avis 1333 N Highland Ave
- Car hire Bellingham
- Car hire Bow
- Car hire Friday Harbor
- Dollar Rental Cars in San Juan Island
- Easirent.com Rental Cars in Fidalgo Island
- Car hire in Enterprise 551 Daybrite Dr
- Nextcar Rental Cars in San Juan Islands
- Priceless Car Rental Rental Cars in Orcas Island